Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs17790390 chr11:47151897 A/G 0.000153 289 10.82 31.57 25.4 KM Plot
KIRP rs17790420 chr11:47169555 G/A 7.69E-7 288 25.4 31.57 12.63 KM Plot
KIRP rs180830196 chr13:46987680 A/G 6.35E-7 289 25.02 30.2 23.23 KM Plot
KIRP rs180889044 chr11:76293848 A/G 1.49E-6 285 25.7 27.98 16.38 KM Plot
KIRP rs1809941 chr5:156482459 G/T 3.01E-6 280 12.1 24.8 25.97 KM Plot
KIRP rs1812421 chr8:122074408 A/G 7.9E-8 289 9 21.67 26 KM Plot
KIRP rs182056511 chr17:80743120 A/G 7.38E-9 282 26.07 26 16.4 KM Plot
KIRP rs1821473 chr5:136498033 A/G 3.49E-10 289 10.97 26.8 25.58 KM Plot
KIRP rs183041801 chr16:90022269 A/G 2.09E-8 281 24.67 34.82 5.95 KM Plot
KIRP rs1837308 chr2:128487535 C/G 1.2E-6 288 26 22.57 8.47 KM Plot
KIRP rs1847350 chr1:58997626 A/G 2.29E-5 289 25.6 27.43 13.17 KM Plot
KIRP rs1847351 chr1:58997687 A/G 2.29E-5 289 25.6 27.43 13.17 KM Plot
KIRP rs184748739 chr11:76293851 C/T 1.49E-6 285 25.7 27.98 16.38 KM Plot
KIRP rs185081604 chr7:73003303 A/C 2.32E-6 284 26.57 18.02 11.2 KM Plot
KIRP rs185686655 chr11:102787261 C/T 0.000129 277 25.4 27.13 16.4 KM Plot